8-Tetrahydropyran-2-yl chromans: highly selective beta-site amyloid precursor protein cleaving enzyme 1 (BACE1) inhibitors

J Med Chem. 2014 Dec 11;57(23):10112-29. doi: 10.1021/jm5015132. Epub 2014 Nov 26.

Abstract

A series of 2,3,4,4a,10,10a-hexahydropyrano[3,2-b]chromene analogs was developed that demonstrated high selectivity (>2000-fold) for BACE1 vs Cathepsin D (CatD). Three different Asp-binding moieties were examined: spirocyclic acyl guanidines, aminooxazolines, and aminothiazolines in order to modulate potency, selectivity, efflux, and permeability. Guided by structure based design, changes to P2' and P3 moieties were explored. A conformationally restricted P2' methyl group provided inhibitors with excellent cell potency (37-137 nM) and selectivity (435 to >2000-fold) for BACE1 vs CatD. These efforts lead to compound 59, which demonstrated a 69% reduction in rat CSF Aβ1-40 at 60 mg/kg (PO).

MeSH terms

  • Amyloid Precursor Protein Secretases / antagonists & inhibitors*
  • Animals
  • Aspartic Acid Endopeptidases / antagonists & inhibitors*
  • Brain / metabolism
  • Cathepsin D
  • Chromans / chemical synthesis*
  • Chromans / pharmacokinetics
  • Chromans / pharmacology
  • HEK293 Cells
  • Humans
  • Inhibitory Concentration 50
  • Male
  • Mice
  • Models, Molecular
  • Protease Inhibitors / chemical synthesis*
  • Protease Inhibitors / pharmacokinetics
  • Protease Inhibitors / pharmacology
  • Rats
  • Spiro Compounds / chemical synthesis*
  • Spiro Compounds / pharmacokinetics
  • Spiro Compounds / pharmacology
  • Stereoisomerism
  • Structure-Activity Relationship

Substances

  • 3-((4R,4a'S,10a'R)-2-amino-4a'-methyl-3',4',4a',10a'-tetrahydro-2'H,5H-spiro(oxazole-4,10'-pyrano(3,2-b)chromen)-8'-yl)benzonitrile
  • Chromans
  • Protease Inhibitors
  • Spiro Compounds
  • Amyloid Precursor Protein Secretases
  • Aspartic Acid Endopeptidases
  • Bace1 protein, rat
  • Cathepsin D

Associated data

  • PDB/4R5N
  • PDB/4RRN
  • PDB/4RRO
  • PDB/4RRS